PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.197380.1
Common NameCsa_1G007910, LOC101215588
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 277aa    MW: 30172.6 Da    PI: 6.3063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.197380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.3e-11157204455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Cucsa.197380.1 157 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 204
                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-18151223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-10151208No hitNo description
PROSITE profilePS5088815.828153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-18153222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDPPLVNESS FSAANPSAYS LASIWPFGGD QGGSVLGLRM ANLAQNLGGF RECSTNRDGS  60
MEESTVTEQS GGGRKRKDVS SEDESSRMVS TSSANQLSNS NDKRMKVVES RDENGGIKAE  120
VDPNSSDGKK LVEQSPKPEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV  180
PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR MNITPGIEGF TVKNIVNQPY  240
DAAGILYGSQ AARDYTQGAQ TEWLHMQIGG GFERTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-154LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-154LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138140.10.0PREDICTED: transcription factor bHLH79
SwissprotQ9LV176e-89BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A0A0LS740.0A0A0A0LS74_CUCSA; Uncharacterized protein
STRINGVIT_17s0000g05370.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.14e-90bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]